AffyCompatible
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.16 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see AffyCompatible.
Affymetrix GeneChip software compatibility
Bioconductor version: 3.16
This package provides an interface to Affymetrix chip annotation and sample attribute files. The package allows an easy way for users to download and manage local data bases of Affynmetrix NetAffx annotation files. The package also provides access to GeneChip Operating System (GCOS) and GeneChip Command Console (AGCC)-compatible sample annotation files.
Author: Martin Morgan, Robert Gentleman
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
citation("AffyCompatible")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("AffyCompatible")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("AffyCompatible")| Annotation retrieval with NetAffxResource | R Script | |
| Retrieving MAGE and ARR sample attributes | R Script | |
| Reference Manual |
Details
| biocViews | Infrastructure, Microarray, OneChannel, Software |
| Version | 1.58.0 |
| In Bioconductor since | BioC 2.2 (R-2.7) (16 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.7.0), XML (>= 2.8-1), RCurl (>= 0.8-1), methods |
| Imports | Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | AffyCompatible_1.58.0.tar.gz |
| Windows Binary | AffyCompatible_1.58.0.zip |
| macOS Binary (x86_64) | AffyCompatible_1.58.0.tgz |
| macOS Binary (arm64) | AffyCompatible_1.58.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/AffyCompatible |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/AffyCompatible |
| Package Short Url | https://bioconductor.org/packages/AffyCompatible/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |