ArrayExpress

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see ArrayExpress.

Access the ArrayExpress Microarray Database at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Bioconductor version: 3.16

Access the ArrayExpress Repository at EBI and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet

Author: Audrey Kauffmann, Ibrahim Emam, Michael Schubert

Maintainer: Suhaib Mohammed <suhaib at ebi.ac.uk>

Citation (from within R, enter citation("ArrayExpress")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ArrayExpress")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ArrayExpress")

ArrayExpress: Import and convert ArrayExpress data sets into R object	PDF	R Script
Reference Manual	PDF

biocViews	DataImport, Microarray, OneChannel, Software, TwoChannel
Version	1.57.0
In Bioconductor since	BioC 2.3 (R-2.8) (15.5 years)
License	Artistic-2.0
Depends	R (>= 2.9.0), Biobase(>= 2.4.0)
Imports	XML, oligo, limma
System Requirements
URL

Follow Installation instructions to use this package in your R session.

Source Package	ArrayExpress_1.57.0.tar.gz
Windows Binary	ArrayExpress_1.57.0.zip
macOS Binary (x86_64)	ArrayExpress_1.57.0.tgz
macOS Binary (arm64)	ArrayExpress_1.57.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ArrayExpress
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ArrayExpress
Bioc Package Browser	https://code.bioconductor.org/browse/ArrayExpress/
Package Short Url	https://bioconductor.org/packages/ArrayExpress/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive