GeneExpressionSignature
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see GeneExpressionSignature.
Gene Expression Signature based Similarity Metric
Bioconductor version: 3.16
This package gives the implementations of the gene expression signature and its distance to each. Gene expression signature is represented as a list of genes whose expression is correlated with a biological state of interest. And its distance is defined using a nonparametric, rank-based pattern-matching strategy based on the Kolmogorov-Smirnov statistic. Gene expression signature and its distance can be used to detect similarities among the signatures of drugs, diseases, and biological states of interest.
Author: Yang Cao [aut, cre], Fei Li [ctb], Lu Han [ctb]
Maintainer: Yang Cao <yiluheihei at gmail.com>
citation("GeneExpressionSignature")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("GeneExpressionSignature")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GeneExpressionSignature")| GeneExpressionSignature | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software |
| Version | 1.44.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (12.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0) |
| Imports | Biobase, stats, methods |
| System Requirements | |
| URL | https://github.com/yiluheihei/GeneExpressionSignature |
| Bug Reports | https://github.com/yiluheihei/GeneExpressionSignature/issues/ |
See More
| Suggests | apcluster, GEOquery, knitr, rmarkdown, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | GeneExpressionSignature_1.44.0.tar.gz |
| Windows Binary | GeneExpressionSignature_1.44.0.zip |
| macOS Binary (x86_64) | GeneExpressionSignature_1.44.0.tgz |
| macOS Binary (arm64) | GeneExpressionSignature_1.44.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/GeneExpressionSignature |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/GeneExpressionSignature |
| Bioc Package Browser | https://code.bioconductor.org/browse/GeneExpressionSignature/ |
| Package Short Url | https://bioconductor.org/packages/GeneExpressionSignature/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |