MobilityTransformR
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see MobilityTransformR.
Effective mobility scale transformation of CE-MS(/MS) data
Bioconductor version: 3.16
MobilityTransformR collects a tool set for effective mobility scale transformation of CE-MS/MS data in order to increase reproducibility. It provides functionality to determine the migration times from mobility markers that have been added to the analysis and performs the transformation based on these markers. MobilityTransformR supports the conversion of numeric vectors, Spectra-objects, and MSnOnDiskExp.
Author: Liesa Salzer [cre, aut] 
Maintainer: Liesa Salzer <liesa.salzer at helmholtz-muenchen.de>
citation("MobilityTransformR")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("MobilityTransformR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MobilityTransformR")| Description and usage of MobilityTransformR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, MassSpectrometry, Metabolomics, Preprocessing, Proteomics, Software |
| Version | 1.2.0 |
| In Bioconductor since | BioC 3.15 (R-4.2) (2 years) |
| License | Artistic-2.0 |
| Depends | MSnbase, R (>= 4.2) |
| Imports | xcms, MetaboCoreUtils, Spectra |
| System Requirements | |
| URL | https://github.com/LiesaSalzer/MobilityTransformR |
| Bug Reports | https://github.com/LiesaSalzer/MobilityTransformR/issues |
See More
| Suggests | testthat, msdata(>= 0.35.3), knitr (>= 1.1.0), roxygen2, BiocStyle(>= 2.5.19), rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | MobilityTransformR_1.2.0.tar.gz |
| Windows Binary | MobilityTransformR_1.2.0.zip |
| macOS Binary (x86_64) | MobilityTransformR_1.2.0.tgz |
| macOS Binary (arm64) | MobilityTransformR_1.2.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/MobilityTransformR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/MobilityTransformR |
| Bioc Package Browser | https://code.bioconductor.org/browse/MobilityTransformR/ |
| Package Short Url | https://bioconductor.org/packages/MobilityTransformR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |