pageRank
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see pageRank.
Temporal and Multiplex PageRank for Gene Regulatory Network Analysis
Bioconductor version: 3.16
Implemented temporal PageRank analysis as defined by Rozenshtein and Gionis. Implemented multiplex PageRank as defined by Halu et al. Applied temporal and multiplex PageRank in gene regulatory network analysis.
Author: Hongxu Ding [aut, cre, ctb, cph]
Maintainer: Hongxu Ding <hd2326 at columbia.edu>
citation("pageRank")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("pageRank")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("pageRank")| introduction.pdf | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneTarget, Network, Software, StatisticalMethod |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0) |
| Imports | GenomicRanges, igraph, motifmatchr, stats, utils, grDevices, graphics |
| System Requirements | |
| URL | https://github.com/hd2326/pageRank |
| Bug Reports | https://github.com/hd2326/pageRank/issues |
See More
| Suggests | bcellViper, BSgenome.Hsapiens.UCSC.hg19, JASPAR2018, TxDb.Hsapiens.UCSC.hg19.knownGene, org.Hs.eg.db, TFBSTools, GenomicFeatures, annotate |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | pageRank_1.8.0.tar.gz |
| Windows Binary | pageRank_1.8.0.zip |
| macOS Binary (x86_64) | pageRank_1.8.0.tgz |
| macOS Binary (arm64) | pageRank_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/pageRank |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/pageRank |
| Bioc Package Browser | https://code.bioconductor.org/browse/pageRank/ |
| Package Short Url | https://bioconductor.org/packages/pageRank/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |