pogos

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see pogos.

PharmacOGenomics Ontology Support

Bioconductor version: 3.16

Provide simple utilities for querying bhklab PharmacoDB, modeling API outputs, and integrating to cell and compound ontologies.

Author: Vince Carey <stvjc at channing.harvard.edu>

Maintainer: VJ Carey <stvjc at channing.harvard.edu>

Citation (from within R, enter citation("pogos")):

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("pogos")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("pogos")

pogos -- simple interface to bhklab PharmacoDB with emphasis on ontology	HTML	R Script
Reference Manual	PDF

biocViews	ImmunoOncology, Pharmacogenomics, PooledScreens, Software
Version	1.18.0
In Bioconductor since	BioC 3.7 (R-3.5) (6 years)
License	Artistic-2.0
Depends	R (>= 3.5.0), rjson (>= 0.2.15), httr (>= 1.3.1)
Imports	methods, S4Vectors, utils, shiny, ontoProc, ggplot2, graphics
System Requirements
URL

Suggests	knitr, DT, ontologyPlot, testthat, rmarkdown, BiocStyle
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me	BiocOncoTK
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	pogos_1.18.0.tar.gz
Windows Binary	pogos_1.18.0.zip (64-bit only)
macOS Binary (x86_64)	pogos_1.18.0.tgz
macOS Binary (arm64)	pogos_1.18.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/pogos
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/pogos
Bioc Package Browser	https://code.bioconductor.org/browse/pogos/
Package Short Url	https://bioconductor.org/packages/pogos/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.16	Source Archive