rebook
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see rebook.
Re-using Content in Bioconductor Books
Bioconductor version: 3.16
Provides utilities to re-use content across chapters of a Bioconductor book. This is mostly based on functionality developed while writing the OSCA book, but generalized for potential use in other large books with heavy compute. Also contains some functions to assist book deployment.
Author: Aaron Lun [aut, cre, cph]
Maintainer: Aaron Lun <infinite.monkeys.with.keyboards at gmail.com>
citation("rebook")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("rebook")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rebook")| Reusing book content | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, ReportWriting, Software |
| Version | 1.8.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (3.5 years) |
| License | GPL-3 |
| Depends | |
| Imports | utils, methods, knitr (>= 1.32), rmarkdown, CodeDepends, dir.expiry, filelock, BiocStyle |
| System Requirements | |
| URL |
See More
| Suggests | testthat, igraph, XML, BiocManager, RCurl, bookdown, rappdirs, yaml, BiocParallel, OSCA.intro, OSCA.workflows |
| Linking To | |
| Enhances | |
| Depends On Me | csawBook, OSCA, OSCA.advanced, OSCA.basic, OSCA.intro, OSCA.multisample, OSCA.workflows, SingleRBook |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | rebook_1.8.0.tar.gz |
| Windows Binary | rebook_1.8.0.zip (64-bit only) |
| macOS Binary (x86_64) | rebook_1.8.0.tgz |
| macOS Binary (arm64) | rebook_1.8.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/rebook |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/rebook |
| Bioc Package Browser | https://code.bioconductor.org/browse/rebook/ |
| Package Short Url | https://bioconductor.org/packages/rebook/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.16 | Source Archive |