FDb.FANTOM4.promoters.hg19

This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see FDb.FANTOM4.promoters.hg19.

Annotation package for FANTOM4 promoters identified from THP-1 cells


Bioconductor version: 3.16

FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified

Author: Tim Triche, Jr.

Maintainer: Tim Triche, Jr. <tim.triche at gmail.com>

Citation (from within R, enter citation("FDb.FANTOM4.promoters.hg19")):

Installation

To install this package, start R (version "4.2") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("FDb.FANTOM4.promoters.hg19")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

Reference Manual PDF

Details

biocViews AnnotationData, Homo_sapiens
Version 1.0.0
License Artistic-2.0
Depends GenomicFeatures(>= 1.7.22), Biostrings
Imports GenomicFeatures, AnnotationDbi
System Requirements
URL
See More
Suggests BSgenome.Hsapiens.UCSC.hg19, rtracklayer, matrixStats
Linking To
Enhances
Depends On Me
Imports Me
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package FDb.FANTOM4.promoters.hg19_1.0.0.tar.gz
Windows Binary
macOS Binary (x86_64)
macOS Binary (arm64)
Package Short Url https://bioconductor.org/packages/FDb.FANTOM4.promoters.hg19/
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