PCHiCdata
This package is for version 3.16 of Bioconductor; for the stable, up-to-date release version, see PCHiCdata.
Promoter Capture Hi-C data
Bioconductor version: 3.16
Subsets of Promoter Capture Hi-C data conveniently packaged for Chicago users. Data includes interactions detected for chromosomes 20 and 21 in GM12878 cells and for chromosomes 18 and 19 in mESC.
Author: Paula Freire-Pritchett, Jonathan Cairns, Steven Wingett, Mikhail Spivakov
Maintainer: Mikhail Spivakov <mikhail.spivakov at lms.mrc.ac.uk>
citation("PCHiCdata")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("PCHiCdata")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("PCHiCdata")| PCHiCdata Vignette | HTML | R Script |
| Reference Manual |
Details
| biocViews | ExperimentData, Homo_sapiens_Data, Mus_musculus_Data, SequencingData, StemCell |
| Version | 1.26.0 |
| License | Artistic-2.0 |
| Depends | R (>= 3.2), Chicago |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | testthat, BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | Chicago |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | PCHiCdata_1.26.0.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/PCHiCdata |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/PCHiCdata |
| Package Short Url | https://bioconductor.org/packages/PCHiCdata/ |
| Package Downloads Report | Download Stats |