class pdb.ResidueBase

Available on all platforms

base class for PDB residue (amino acids, water, lipids, ions, ...)

Sub classes:

PdbResidue

Container of a residue in pdb file. Non-amino acid molecules such as waters, co-factors, lipids are considered as residues.

Instance Fields

var index:Int

residue index

var isCterm:Bool

is a C-terminal residue?

var isNterm:Bool

is an N-terminal residue?

var name:String

residue name

function new(n:String, i:Int, isnt:Bool, isct:Bool):Void

Constructor.

  • n: residue name
  • i: residue index
  • isnt: is N-terminal?
  • isct: is C-terminal?

function get_index():Int

getter for index

function get_isCterm():Bool

getter for isCterm

function get_isNterm():Bool

getter for isNterm

function get_name():String

getter for name

function set_index(i:Int):Int

setter for index

function set_isCterm(b:Bool):Bool

setter for isCterm

function set_isNterm(b:Bool):Bool

setter for isNterm

function set_name(s:String):String

setter for name