EasyqpcR
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see EasyqpcR.
EasyqpcR for low-throughput real-time quantitative PCR data analysis
Bioconductor version: 3.10
This package is based on the qBase algorithms published by Hellemans et al. in 2007. The EasyqpcR package allows you to import easily qPCR data files as described in the vignette. Thereafter, you can calculate amplification efficiencies, relative quantities and their standard errors, normalization factors based on the best reference genes choosen (using the SLqPCR package), and then the normalized relative quantities, the NRQs scaled to your control and their standard errors. This package has been created for low-throughput qPCR data analysis.
Author: Le Pape Sylvain
Maintainer: Le Pape Sylvain <sylvain.le.pape at univ-poitiers.fr>
citation("EasyqpcR")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EasyqpcR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EasyqpcR")| EasyqpcR | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Software, qPCR |
| Version | 1.28.0 |
| In Bioconductor since | BioC 2.11 (R-2.15) (11.5 years) |
| License | GPL (>=2) |
| Depends | |
| Imports | plyr, matrixStats, plotrix, gWidgetsRGtk2 |
| System Requirements | |
| URL |
See More
| Suggests | SLqPCR, qpcrNorm, qpcR, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EasyqpcR_1.28.0.tar.gz |
| Windows Binary | EasyqpcR_1.28.0.zip |
| Mac OS X 10.11 (El Capitan) | EasyqpcR_1.28.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EasyqpcR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EasyqpcR |
| Bioc Package Browser | https://code.bioconductor.org/browse/EasyqpcR/ |
| Package Short Url | https://bioconductor.org/packages/EasyqpcR/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |