HCAExplorer

This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see HCAExplorer.

Browse the Human Cell Atlas data portal


Bioconductor version: 3.10

Search, browse, reference, and download resources from the Human Cell Atlas data portal. Development of this package is supported through funds from the Chan / Zuckerberg initiative.

Author: Daniel Van Twisk [aut], Martin Morgan [aut], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("HCAExplorer")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("HCAExplorer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("HCAExplorer")
HCAExplorer HTML R Script
Reference Manual PDF

Details

biocViews DataImport, Sequencing, Software
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License Artistic-2.0
Depends R (>= 3.6.0), dplyr
Imports S4Vectors, vctrs, curl, httr, jsonlite, methods, plyr, rlang, tibble, tidygraph, utils
System Requirements
URL https://github.com/Bioconductor/HCABrowser
Bug Reports https://github.com/Bioconductor/HCABrowser/issues
See More
Suggests BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0)
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package HCAExplorer_1.0.0.tar.gz
Windows Binary HCAExplorer_1.0.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan) HCAExplorer_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/HCAExplorer
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/HCAExplorer
Bioc Package Browser https://code.bioconductor.org/browse/HCAExplorer/
Package Short Url https://bioconductor.org/packages/HCAExplorer/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive