IdeoViz
This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see IdeoViz.
Plots data (continuous/discrete) along chromosomal ideogram
Bioconductor version: 3.10
Plots data associated with arbitrary genomic intervals along chromosomal ideogram.
Author: Shraddha Pai <shraddha.pai at utoronto.ca>, Jingliang Ren
Maintainer: Shraddha Pai <shraddha.pai at utoronto.ca>
Citation (from within R, enter
citation("IdeoViz")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("IdeoViz")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("IdeoViz")| IdeoViz: a package for plotting simple data along ideograms | R Script | |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Microarray, Software, Visualization |
| Version | 1.22.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) (9.5 years) |
| License | GPL-2 |
| Depends | Biobase, IRanges, GenomicRanges, RColorBrewer, rtracklayer, graphics, GenomeInfoDb |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | IdeoViz_1.22.0.tar.gz |
| Windows Binary | IdeoViz_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | IdeoViz_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/IdeoViz |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/IdeoViz |
| Bioc Package Browser | https://code.bioconductor.org/browse/IdeoViz/ |
| Package Short Url | https://bioconductor.org/packages/IdeoViz/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |