Mirsynergy
This package is for version 3.10 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Mirsynergy.
Mirsynergy
Bioconductor version: 3.10
Detect synergistic miRNA regulatory modules by overlapping neighbourhood expansion.
Author: Yue Li
Maintainer: Yue Li <yueli at cs.toronto.edu>
Citation (from within R, enter
citation("Mirsynergy")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Mirsynergy")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Mirsynergy")| Mirsynergy | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Clustering, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.14 (R-3.1) (10 years) |
| License | GPL-2 |
| Depends | R (>= 3.0.2), igraph, ggplot2 |
| Imports | graphics, grDevices, gridExtra, Matrix, parallel, RColorBrewer, reshape, scales, utils |
| System Requirements | |
| URL | http://www.cs.utoronto.ca/~yueli/Mirsynergy.html |
See More
| Suggests | glmnet, RUnit, BiocGenerics, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Mirsynergy_1.22.0.tar.gz |
| Windows Binary | Mirsynergy_1.22.0.zip |
| Mac OS X 10.11 (El Capitan) | Mirsynergy_1.22.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Mirsynergy |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Mirsynergy |
| Bioc Package Browser | https://code.bioconductor.org/browse/Mirsynergy/ |
| Package Short Url | https://bioconductor.org/packages/Mirsynergy/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.10 | Source Archive |