SEtools

This package is for version 3.10 of Bioconductor; for the stable, up-to-date release version, see SEtools.

SEtools: tools for working with SummarizedExperiment


Bioconductor version: 3.10

This includes a set of tools for working with the SummarizedExperiment class, including handy merging and plotting functions.

Author: Pierre-Luc Germain [cre, aut]

Maintainer: Pierre-Luc Germain <pierre-luc.germain at hest.ethz.ch>

Citation (from within R, enter citation("SEtools")):

Installation

To install this package, start R (version "3.6") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("SEtools")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("SEtools")
SEtools HTML R Script
Reference Manual PDF

Details

biocViews DataRepresentation, Software, Visualization
Version 1.0.0
In Bioconductor since BioC 3.10 (R-3.6) (4.5 years)
License GPL
Depends R (>= 3.6)
Imports SummarizedExperiment, data.table, pheatmap, seriation, ComplexHeatmap, circlize, methods
System Requirements
URL
See More
Suggests BiocStyle, knitr, rmarkdown, ggplot2
Linking To
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Depends On Me
Imports Me
Suggests Me
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Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package SEtools_1.0.0.tar.gz
Windows Binary SEtools_1.0.0.zip
Mac OS X 10.11 (El Capitan) SEtools_1.0.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/SEtools
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/SEtools
Bioc Package Browser https://code.bioconductor.org/browse/SEtools/
Package Short Url https://bioconductor.org/packages/SEtools/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.10 Source Archive