DART
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see DART.
Denoising Algorithm based on Relevance network Topology
Bioconductor version: 3.11
Denoising Algorithm based on Relevance network Topology (DART) is an algorithm designed to evaluate the consistency of prior information molecular signatures (e.g in-vitro perturbation expression signatures) in independent molecular data (e.g gene expression data sets). If consistent, a pruning network strategy is then used to infer the activation status of the molecular signature in individual samples.
Author: Yan Jiao, Katherine Lawler, Andrew E Teschendorff, Charles Shijie Zheng
Maintainer: Charles Shijie Zheng <charles_zheng at live.com>
citation("DART")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DART")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DART")| DART Tutorial | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DifferentialExpression, GeneExpression, GraphAndNetwork, Pathways, Software |
| Version | 1.36.0 |
| In Bioconductor since | BioC 2.10 (R-2.15) (12 years) |
| License | GPL-2 |
| Depends | R (>= 2.10.0), igraph (>= 0.6.0) |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | breastCancerVDX, breastCancerMAINZ, Biobase |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DART_1.36.0.tar.gz |
| Windows Binary | DART_1.36.0.zip |
| macOS 10.13 (High Sierra) | DART_1.36.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DART |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DART |
| Bioc Package Browser | https://code.bioconductor.org/browse/DART/ |
| Package Short Url | https://bioconductor.org/packages/DART/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |