LINC
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see LINC.
co-expression of lincRNAs and protein-coding genes
Bioconductor version: 3.11
This package provides methods to compute co-expression networks of lincRNAs and protein-coding genes. Biological terms associated with the sets of protein-coding genes predict the biological contexts of lincRNAs according to the 'Guilty by Association' approach.
Author: Manuel Goepferich, Carl Herrmann
Maintainer: Manuel Goepferich <manuel.goepferich at gmx.de>
citation("LINC")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("LINC")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("LINC")| LINC - Co-Expression Analysis of lincRNAs | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, GeneExpression, GeneRegulation, Software |
| Version | 1.15.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.1), methods, stats |
| Imports | Rcpp (>= 0.11.0), DOSE, ggtree, gridExtra, ape, grid, png, Biobase, sva, reshape2, utils, grDevices, org.Hs.eg.db, clusterProfiler, ggplot2, ReactomePA |
| System Requirements | |
| URL |
See More
| Suggests | RUnit, BiocGenerics, knitr, biomaRt |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | LINC_1.15.0.tar.gz |
| Windows Binary | LINC_1.15.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/LINC |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/LINC |
| Bioc Package Browser | https://code.bioconductor.org/browse/LINC/ |
| Package Short Url | https://bioconductor.org/packages/LINC/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |