Onassis
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see Onassis.
OnASSIs Ontology Annotation and Semantic SImilarity software
Bioconductor version: 3.11
A package that allows the annotation of text with ontology terms (mainly from OBO ontologies) and the computation of semantic similarity measures based on the structure of the ontology between different annotated samples.
Author: Eugenia Galeota
Maintainer: Eugenia Galeota <eugenia.galeota at gmail.com>
citation("Onassis")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Onassis")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Onassis")| Onassis: Ontology Annotation and Semantic Similarity software | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Annotation, Clustering, DataImport, GeneTarget, Network, Software |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.6 (R-3.4) (6.5 years) |
| License | GPL-2 |
| Depends | R (>= 4.0), rJava, OnassisJavaLibs |
| Imports | GEOmetadb, RSQLite, data.table, methods, tools, utils, AnnotationDbi, RCurl, stats, DT, data.table, knitr, Rtsne, dendextend, clusteval, ggplot2, ggfortify |
| System Requirements | Java (>= 1.8) |
| URL |
See More
| Suggests | BiocStyle, rmarkdown, htmltools, org.Hs.eg.db, gplots, GenomicRanges, kableExtra |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Onassis_1.10.0.tar.gz |
| Windows Binary | Onassis_1.10.0.zip |
| macOS 10.13 (High Sierra) | Onassis_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Onassis |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Onassis |
| Bioc Package Browser | https://code.bioconductor.org/browse/Onassis/ |
| Package Short Url | https://bioconductor.org/packages/Onassis/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |