RNAmodR.ML
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see RNAmodR.ML.
Detecting patterns of post-transcriptional modifications using machine learning
Bioconductor version: 3.11
RNAmodR.ML extend the functionality of the RNAmodR package and classical detection strategies towards detection through machine learning models. RNAmodR.ML provides classes, functions and an example workflow to establish a detection stratedy, which can be packaged.
Author: Felix G.M. Ernst [aut, cre] 
, Denis L.J. Lafontaine [ctb]
Maintainer: Felix G.M. Ernst <felix.gm.ernst at outlook.com>
citation("RNAmodR.ML")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RNAmodR.ML")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RNAmodR.ML")| RNAmodR.ML | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Infrastructure, Sequencing, Software, Visualization, WorkflowStep |
| Version | 1.2.1 |
| In Bioconductor since | BioC 3.10 (R-3.6) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.6), RNAmodR |
| Imports | methods, BiocGenerics, S4Vectors, IRanges, GenomicRanges, stats, ranger |
| System Requirements | |
| URL | https://github.com/FelixErnst/RNAmodR.ML |
| Bug Reports | https://github.com/FelixErnst/RNAmodR.ML/issues |
See More
| Suggests | BiocStyle, knitr, rmarkdown, testthat, RNAmodR.Data, RNAmodR.AlkAnilineSeq, GenomicFeatures, Rsamtools, rtracklayer, keras |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RNAmodR.ML_1.2.1.tar.gz |
| Windows Binary | RNAmodR.ML_1.2.1.zip |
| macOS 10.13 (High Sierra) | RNAmodR.ML_1.2.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RNAmodR.ML |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RNAmodR.ML |
| Bioc Package Browser | https://code.bioconductor.org/browse/RNAmodR.ML/ |
| Package Short Url | https://bioconductor.org/packages/RNAmodR.ML/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |