Rcpi

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see Rcpi.

Molecular Informatics Toolkit for Compound-Protein Interaction in Drug Discovery


Bioconductor version: 3.11

Rcpi offers a molecular informatics toolkit with a comprehensive integration of bioinformatics and chemoinformatics tools for drug discovery.

Author: Nan Xiao [aut, cre], Dong-Sheng Cao [aut], Qing-Song Xu [aut]

Maintainer: Nan Xiao <me at nanx.me>

Citation (from within R, enter citation("Rcpi")):

Installation

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rcpi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rcpi")
Rcpi Quick Reference Card HTML
Rcpi: R/Bioconductor Package as an Integrated Informatics Platform for Drug Discovery HTML R Script
Reference Manual PDF
NEWS Text
LICENSE Text

Details

biocViews BiomedicalInformatics, Cheminformatics, DataImport, DataRepresentation, FeatureExtraction, GO, Proteomics, Software, SystemsBiology
Version 1.24.0
In Bioconductor since BioC 2.14 (R-3.1) (10 years)
License Artistic-2.0 | file LICENSE
Depends R (>= 3.0.2)
Imports stats, utils, methods, RCurl, rjson, foreach, doParallel, Biostrings, GOSemSim, ChemmineR, fmcsR, rcdk (>= 3.3.8)
System Requirements
URL https://nanx.me/Rcpi/ https://github.com/nanxstats/Rcpi
Bug Reports https://github.com/nanxstats/Rcpi/issues
See More
Suggests knitr, rmarkdown, RUnit, BiocGenerics
Linking To
Enhances ChemmineOB
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package Rcpi_1.24.0.tar.gz
Windows Binary Rcpi_1.24.0.zip
macOS 10.13 (High Sierra) Rcpi_1.24.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/Rcpi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/Rcpi
Bioc Package Browser https://code.bioconductor.org/browse/Rcpi/
Package Short Url https://bioconductor.org/packages/Rcpi/
Package Downloads Report Download Stats
Old Source Packages for BioC 3.11 Source Archive