discordant
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see discordant.
The Discordant Method: A Novel Approach for Differential Correlation
Bioconductor version: 3.11
Discordant is a method to determine differential correlation of molecular feature pairs from -omics data using mixture models. Algorithm is explained further in Siska et al.
Author: Charlotte Siska [cre,aut], Katerina Kechris [aut]
Maintainer: Charlotte Siska <siska.charlotte at gmail.com>
citation("discordant")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("discordant")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("discordant")| Discordant | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, Genetics, ImmunoOncology, Microarray, RNASeq, Software, StatisticalMethod, mRNAMicroarray |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.4) |
| Imports | Biobase, stats, biwt, gtools, MASS, tools |
| System Requirements | |
| URL | https://github.com/siskac/discordant |
See More
| Suggests | BiocStyle, knitr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | discordant_1.12.0.tar.gz |
| Windows Binary | discordant_1.12.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | discordant_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/discordant |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/discordant |
| Bioc Package Browser | https://code.bioconductor.org/browse/discordant/ |
| Package Short Url | https://bioconductor.org/packages/discordant/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |