iSEEu
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see iSEEu.
iSEE Universe
Bioconductor version: 3.11
iSEEu (the iSEE universe) contains diverse functionality to extend the usage of the iSEE package, including additional classes for the panels, or modes allowing easy configuration of iSEE applications.
Author: Kevin Rue-Albrecht [aut, cre] , Charlotte Soneson [aut]
, Federico Marini [aut]
, Aaron Lun [aut]
, Michael Stadler [ctb]
Maintainer: Kevin Rue-Albrecht <kevinrue67 at gmail.com>
citation("iSEEu")
):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iSEEu")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iSEEu")
Panel universe | HTML | R Script |
Reference Manual | ||
NEWS | Text | |
LICENSE | Text |
Details
biocViews | CellBasedAssays, Clustering, DimensionReduction, FeatureExtraction, GUI, GeneExpression, ImmunoOncology, SingleCell, Software, Transcription, Transcriptomics, Visualization |
Version | 1.0.1 |
In Bioconductor since | BioC 3.11 (R-4.0) (4 years) |
License | MIT + file LICENSE |
Depends | iSEE |
Imports | methods, S4Vectors, shiny, SummarizedExperiment, SingleCellExperiment, ggplot2, DT, stats |
System Requirements | |
URL | https://github.com/iSEE/iSEEu |
Bug Reports | https://github.com/iSEE/iSEEu/issues |
See More
Suggests | scRNAseq, scater, scran, airway, edgeR, AnnotationDbi, org.Hs.eg.db, GO.db, knitr, rmarkdown, BiocStyle, htmltools, Rtsne, uwot, testthat (>= 2.1.0) |
Linking To | |
Enhances | |
Depends On Me | |
Imports Me | |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | iSEEu_1.0.1.tar.gz |
Windows Binary | iSEEu_1.0.1.zip |
macOS 10.13 (High Sierra) | iSEEu_1.0.1.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/iSEEu |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iSEEu |
Bioc Package Browser | https://code.bioconductor.org/browse/iSEEu/ |
Package Short Url | https://bioconductor.org/packages/iSEEu/ |
Package Downloads Report | Download Stats |
Old Source Packages for BioC 3.11 | Source Archive |