levi
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see levi.
Landscape Expression Visualization Interface
Bioconductor version: 3.11
The tool integrates data from biological networks with transcriptomes, displaying a heatmap with surface curves to evidence the altered regions.
Author: Jose Rafael Pilan <rafael.pilan at unesp.br>, Isabelle Mira da Silva <isabelle.silva at unesp.br>, Agnes Alessandra Sekijima Takeda <agnes.takeda at unesp.br>, Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>
Maintainer: Jose Luiz Rybarczyk Filho <jose.luiz at unesp.br>
citation("levi")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("levi")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("levi")| Using levi | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | GeneExpression, Network, Sequencing, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | GPL (>= 2) |
| Depends | |
| Imports | DT (>= 0.4), RColorBrewer (>= 1.1-2), colorspace (>= 1.3-2), dplyr (>= 0.7.4), ggplot2 (>= 2.2.1), httr (>= 1.3.1), igraph (>= 1.2.1), reshape2 (>= 1.4.3), shiny (>= 1.0.5), shinydashboard (>= 0.7.0), shinyjs (>= 1.0), xml2 (>= 1.2.0), knitr, Rcpp (>= 0.12.18), grid, grDevices, stats, utils, testthat, methods |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | levi_1.6.0.tar.gz |
| Windows Binary | levi_1.6.0.zip (32- & 64-bit) |
| macOS 10.13 (High Sierra) | levi_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/levi |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/levi |
| Bioc Package Browser | https://code.bioconductor.org/browse/levi/ |
| Package Short Url | https://bioconductor.org/packages/levi/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |