methylInheritance
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see methylInheritance.
Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect
Bioconductor version: 3.11
Permutation analysis, based on Monte Carlo sampling, for testing the hypothesis that the number of conserved differentially methylated elements, between several generations, is associated to an effect inherited from a treatment and that stochastic effect can be dismissed.
Author: Astrid Deschênes, Pascal Belleau and Arnaud Droit
Maintainer: Astrid Deschenes <adeschen at hotmail.com>
citation("methylInheritance")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("methylInheritance")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("methylInheritance")| Permutation-Based Analysis associating Conserved Differentially Methylated Elements Across Multiple Generations to a Treatment Effect | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | BiologicalQuestion, DNAMethylation, DifferentialMethylation, Epigenetics, ImmunoOncology, MethylSeq, Sequencing, Software, StatisticalMethod, WholeGenome |
| Version | 1.12.0 |
| In Bioconductor since | BioC 3.5 (R-3.4) (7 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.5) |
| Imports | methylKit, BiocParallel, GenomicRanges, IRanges, S4Vectors, methods, parallel, ggplot2, gridExtra, rebus |
| System Requirements | |
| URL | https://github.com/adeschen/methylInheritance |
| Bug Reports | https://github.com/adeschen/methylInheritance/issues |
See More
| Suggests | BiocStyle, BiocGenerics, knitr, rmarkdown, RUnit, methInheritSim |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | methInheritSim |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | methylInheritance_1.12.0.tar.gz |
| Windows Binary | methylInheritance_1.12.0.zip |
| macOS 10.13 (High Sierra) | methylInheritance_1.12.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/methylInheritance |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/methylInheritance |
| Bioc Package Browser | https://code.bioconductor.org/browse/methylInheritance/ |
| Package Short Url | https://bioconductor.org/packages/methylInheritance/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |