nucleR

This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see nucleR.

Nucleosome positioning package for R

Bioconductor version: 3.11

Nucleosome positioning for Tiling Arrays and NGS experiments.

Author: Oscar Flores, Ricard Illa

Maintainer: Diego Gallego <diego.gallego at irbbarcelona.org>

Citation (from within R, enter citation("nucleR")):

To install this package, start R (version "4.0") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("nucleR")

For older versions of R, please refer to the appropriate Bioconductor release.

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("nucleR")

biocViews	ChIPSeq, Coverage, DataImport, Genetics, Microarray, NucleosomePositioning, QualityControl, Sequencing, Software
Version	2.20.0
In Bioconductor since	BioC 2.9 (R-2.14) (12.5 years)
License	LGPL (>= 3)
Depends	methods
Imports	Biobase, BiocGenerics, Biostrings, GenomeInfoDb, GenomicRanges, IRanges, Rsamtools, S4Vectors, ShortRead, dplyr, ggplot2, magrittr, parallel, stats, utils, grDevices
System Requirements
URL

Suggests	Starr, BiocStyle, knitr, rmarkdown, testthat
Linking To
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	nucleR_2.20.0.tar.gz
Windows Binary
macOS 10.13 (High Sierra)
Source Repository	git clone https://git.bioconductor.org/packages/nucleR
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/nucleR
Bioc Package Browser	https://code.bioconductor.org/browse/nucleR/
Package Short Url	https://bioconductor.org/packages/nucleR/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.11	Source Archive