plrs
This package is for version 3.11 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see plrs.
Piecewise Linear Regression Splines (PLRS) for the association between DNA copy number and gene expression
Bioconductor version: 3.11
The present package implements a flexible framework for modeling the relationship between DNA copy number and gene expression data using Piecewise Linear Regression Splines (PLRS).
Author: Gwenael G.R. Leday
Maintainer: Gwenael G.R. Leday to <gleday at few.vu.nl>
citation("plrs")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("plrs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("plrs")| plrs | R Script | |
| Reference Manual |
Details
| biocViews | Regression, Software |
| Version | 1.27.0 |
| In Bioconductor since | BioC 2.12 (R-3.0) (11 years) |
| License | GPL (>=2.0) |
| Depends | R (>= 2.10), Biobase |
| Imports | BiocGenerics, CGHbase, graphics, grDevices, ic.infer, marray, methods, quadprog, Rcsdp, stats, stats4, utils |
| System Requirements | |
| URL |
See More
| Suggests | mvtnorm, methods |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | plrs_1.27.0.tar.gz |
| Windows Binary | plrs_1.27.0.zip |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/plrs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/plrs |
| Bioc Package Browser | https://code.bioconductor.org/browse/plrs/ |
| Package Short Url | https://bioconductor.org/packages/plrs/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |