sesame
This package is for version 3.11 of Bioconductor; for the stable, up-to-date release version, see sesame.
Tools For Analyzing Illumina Infinium DNA Methylation Arrays
Bioconductor version: 3.11
Tools For analyzing Illumina Infinium DNA methylation arrays.
Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]
Maintainer: Wanding Zhou <zhouwanding at gmail.com>
Citation (from within R, enter
citation("sesame")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("sesame")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("sesame")| 0. SeSAMe User Guide | HTML | R Script |
| 1. Quality Controls | HTML | R Script |
| 2. Large Data | HTML | R Script |
| 3. Minfi Interaction | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (5.5 years) |
| License | MIT + file LICENSE |
| Depends | R (>= 3.6), sesameData, methods |
| Imports | BiocParallel, grDevices, utils, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors, randomForest, wheatmap, ggplot2, parallel, matrixStats, DNAcopy, HDF5Array, SummarizedExperiment |
| System Requirements | |
| URL | https://github.com/zwdzwd/sesame |
| Bug Reports | https://github.com/zwdzwd/sesame/issues |
See More
| Suggests | scales, knitr, rmarkdown, testthat, minfi, FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k, dplyr, tidyr, BiocStyle |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | TCGAbiolinksGUI |
| Suggests Me | sesameData, TCGAbiolinks |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | sesame_1.6.0.tar.gz |
| Windows Binary | sesame_1.6.0.zip |
| macOS 10.13 (High Sierra) | sesame_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/sesame |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/sesame |
| Bioc Package Browser | https://code.bioconductor.org/browse/sesame/ |
| Package Short Url | https://bioconductor.org/packages/sesame/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.11 | Source Archive |