FlowSorted.CordBloodCombined.450k
This package is for version 3.12 of Bioconductor; for the stable, up-to-date release version, see FlowSorted.CordBloodCombined.450k.
Illumina 450k/EPIC data on FACS and MACS umbilical blood cells
Bioconductor version: 3.12
Raw data objects to be used for umbilical cord blood cell proportion estimation in minfi and similar packages. The FlowSorted.CordBloodCombined.450k object is based in samples assayed by Bakulski et al, Gervin et al., de Goede et al., and Lin et al.
Author: Lucas A. Salas [cre, aut], Kristina Gervin [aut], Meaghan C. Jones [aut], Kelly M. Bakulski [ctb], Devin C. Koestler [ctb], John K. Wiencke [ctb], Karl T. Kelsey [ctb], Robert Lyle [ctb], Brock C. Christensen [ctb], Janine Felix [ctb]
Maintainer: Lucas A. Salas <lucas.a.salas.diaz at dartmouth.edu>
citation("FlowSorted.CordBloodCombined.450k")):
Installation
To install this package, start R (version "4.0") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("FlowSorted.CordBloodCombined.450k")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("FlowSorted.CordBloodCombined.450k")| FlowSorted.CordBloodCombined.450k | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | ExperimentData, ExperimentHub, Genome, Homo_sapiens_Data, MethylationArrayData, MicroarrayData, Tissue, TissueMicroarrayData |
| Version | 1.6.0 |
| License | GPL-3 |
| Depends | R (>= 3.6), minfi(>= 1.21.2), SummarizedExperiment, IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), IlluminaHumanMethylationEPICanno.ilm10b4.hg19, ExperimentHub(>= 1.9.1), FlowSorted.Blood.EPIC, utils |
| Imports | |
| System Requirements | |
| URL | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k |
| Bug Reports | https://github.com/immunomethylomics/FlowSorted.CordBloodCombined.450k/issues. |
See More
| Suggests | knitr, rmarkdown, testthat, IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylationEPICanno.ilm10b2.hg19 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | FlowSorted.Blood.EPIC |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | FlowSorted.CordBloodCombined.450k_1.6.0.tar.gz |
| Windows Binary | |
| macOS 10.13 (High Sierra) | |
| Source Repository | git clone https://git.bioconductor.org/packages/FlowSorted.CordBloodCombined.450k |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/FlowSorted.CordBloodCombined.450k |
| Package Short Url | https://bioconductor.org/packages/FlowSorted.CordBloodCombined.450k/ |
| Package Downloads Report | Download Stats |