SNPlocs.Hsapiens.dbSNP.20101109
This package is deprecated. It will probably be removed from Bioconductor. Please refer to the package end-of-life guidelines for more information.
This package is for version 3.15 of Bioconductor; for the stable, up-to-date release version, see SNPlocs.Hsapiens.dbSNP.20101109.
SNP locations for Homo sapiens (dbSNP Build 132)
Bioconductor version: 3.15
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 132. The source data files used for this package were created by NCBI on 9 November 2010 and contain SNPs mapped to reference genome GRCh37. WARNING: Note that the GRCh37 genome is the same as the hg19 genome from UCSC except for the mitochondrion chromosome. Therefore, the SNPs in this package can be "injected" in BSgenome.Hsapiens.UCSC.hg19 but this injection will exclude chrM (i.e. nothing will be injected in that sequence).
Author: Hervé Pagès
Maintainer: H. Pagès <hpages.on.github at gmail.com>
citation("SNPlocs.Hsapiens.dbSNP.20101109")):
Installation
To install this package, start R (version "4.2") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("SNPlocs.Hsapiens.dbSNP.20101109")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | AnnotationData, Genetics, Homo_sapiens, SNPlocs |
| Version | 0.99.9 |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), IRanges, GenomicRanges |
| Imports | methods, S4Vectors, IRanges, GenomicRanges |
| System Requirements | |
| URL |
See More
| Suggests | Biostrings, BSgenome(>= 1.16.1), BSgenome.Hsapiens.UCSC.hg19 |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | VariantAnnotation |
| Links To Me |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | SNPlocs.Hsapiens.dbSNP.20101109_0.99.9.tar.gz |
| Windows Binary | |
| macOS Binary (x86_64) | |
| Package Short Url | https://bioconductor.org/packages/SNPlocs.Hsapiens.dbSNP.20101109/ |
| Package Downloads Report | Download Stats |