To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAMERA")
In most cases, you don't need to download the package archive at all.
CAMERA
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see CAMERA.
Collection of annotation related methods for mass spectrometry data
Bioconductor version: 3.4
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, isotope validation, EIC correlation based tagging of unknown adducts and fragments
Author: Carsten Kuhl, Ralf Tautenhahn, Hendrik Treutler, Steffen Neumann {ckuhl|htreutle|sneumann}@ipb-halle.de, rtautenh@scripps.edu
Maintainer: Steffen Neumann <sneumann at ipb-halle.de>
Citation (from within R,
enter citation("CAMERA")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CAMERA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAMERA")
| Isotope pattern validation with CAMERA | ||
| Isotope pattern validation with CAMERA | ||
| R Script | Molecule Identification with CAMERA | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.30.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) (8 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5) |
| Imports | methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph |
| LinkingTo | |
| Suggests | faahKO, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | Rmpi, snow |
| URL | http://msbi.ipb-halle.de/msbi/CAMERA/ |
| BugReports | https://github.com/sneumann/CAMERA/issues/new |
| Depends On Me | flagme, IPO, LOBSTAHS, MAIT, metaMS, PtH2O2lipids |
| Imports Me | |
| Suggests Me | mtbls2, RMassBank, ropls |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CAMERA_1.30.0.tar.gz |
| Windows Binary | CAMERA_1.30.0.zip (32- & 64-bit) |
| Mac OS X 10.9 (Mavericks) | CAMERA_1.30.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/CAMERA/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/CAMERA/ |
| Package Downloads Report | Download Stats |
Documentation »
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