- Home
- Bioconductor 3.4
- Software Packages
- HTSFilter
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSFilter")
In most cases, you don't need to download the package archive at all.
HTSFilter
|
This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see HTSFilter.
Filter replicated high-throughput transcriptome sequencing data
Bioconductor version: 3.4
This package implements a filtering procedure for replicated transcriptome sequencing data based on a global Jaccard similarity index in order to identify genes with low, constant levels of expression across one or more experimental conditions.
Author: Andrea Rau, Melina Gallopin, Gilles Celeux, and Florence Jaffrezic
Maintainer: Andrea Rau <andrea.rau at jouy.inra.fr>
Citation (from within R,
enter citation("HTSFilter")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("HTSFilter")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("HTSFilter")
| R Script | HTSFilter Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | DifferentialExpression, GeneExpression, Normalization, Preprocessing, RNASeq, Sequencing, Software |
| Version | 1.14.1 |
| In Bioconductor since | BioC 2.12 (R-3.0) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.3.0) |
| Imports | edgeR(>= 3.9.14), DESeq2(>= 1.10.1), DESeq(>= 1.22.1), BiocParallel(>= 1.4.3), Biobase, utils, stats, grDevices, graphics, methods |
| LinkingTo | |
| Suggests | EDASeq(>= 2.1.4), BiocStyle, testthat |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | HTSFilter_1.14.1.tar.gz |
| Windows Binary | HTSFilter_1.14.1.zip |
| Mac OS X 10.9 (Mavericks) | HTSFilter_1.14.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/HTSFilter/tree/release-3.4 |
| Package Short Url | http://bioconductor.org/packages/HTSFilter/ |
| Package Downloads Report | Download Stats |
Documentation »
Bioconductor
- Package vignettes and manuals.
- Workflows for learning and use.
- Course and conference material.
- Videos.
- Community resources and tutorials.
R / CRAN packages and documentation
Support »
Please read the posting guide. Post questions about Bioconductor to one of the following locations:
- Support site - for questions about Bioconductor packages
- Bioc-devel mailing list - for package developers
