To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")

In most cases, you don't need to download the package archive at all.

similaRpeak

This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see similaRpeak.

Metrics to estimate a level of similarity between two ChIP-Seq profiles

Bioconductor version: 3.4

This package calculates metrics which assign a level of similarity between ChIP-Seq profiles.

Author: Astrid Deschenes [cre, aut], Elsa Bernatchez [aut], Charles Joly Beauparlant [aut], Fabien Claude Lamaze [aut], Rawane Samb [aut], Pascal Belleau [aut], Arnaud Droit [aut]

Maintainer: Astrid Louise Deschenes <Astrid-Louise.Deschenes at crchudequebec.ulaval.ca>

Citation (from within R, enter citation("similaRpeak")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("similaRpeak")

Documentation

HTML	R Script	Similarity between two ChIP-Seq profiles
PDF		Reference Manual
Text		NEWS

Details

biocViews	BiologicalQuestion, ChIPSeq, DifferentialExpression, Genetics, MultipleComparison, Software
Version	1.6.0
In Bioconductor since	BioC 3.1 (R-3.2) (2 years)
License	Artistic-2.0
Depends	R6 (>= 2.0)
Imports	rtracklayer, GenomicAlignments, Rsamtools, stats
LinkingTo
Suggests	RUnit, BiocGenerics, knitr, BiocStyle
SystemRequirements
Enhances
URL	https://github.com/adeschen/similaRpeak
BugReports	https://github.com/adeschen/similaRpeak/issues
Depends On Me
Imports Me
Suggests Me	metagene
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	similaRpeak_1.6.0.tar.gz
Windows Binary	similaRpeak_1.6.0.zip
Mac OS X 10.9 (Mavericks)	similaRpeak_1.6.0.tgz
Subversion source	(username/password: readonly)
Git source	https://github.com/Bioconductor-mirror/similaRpeak/tree/release-3.4
Package Short Url	http://bioconductor.org/packages/similaRpeak/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

Package vignettes and manuals.
Workflows for learning and use.
Course and conference material.
Videos.
Community resources and tutorials.

R / CRAN packages and documentation

Support »

Please read the posting guide. Post questions about Bioconductor to one of the following locations:

Support site - for questions about Bioconductor packages
Bioc-devel mailing list - for package developers