ComplexHeatmap
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see ComplexHeatmap.
Making Complex Heatmaps
Bioconductor version: 3.6
Complex heatmaps are efficient to visualize associations between different sources of data sets and reveal potential structures. Here the ComplexHeatmap package provides a highly flexible way to arrange multiple heatmaps and supports self-defined annotation graphics.
Author: Zuguang Gu
Maintainer: Zuguang Gu <z.gu at dkfz.de>
Citation (from within R, enter
citation("ComplexHeatmap")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ComplexHeatmap")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Sequencing, Software, Visualization |
| Version | 1.17.1 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL (>= 2) |
| Depends | R (>= 3.1.2), methods, grid, graphics, stats, grDevices |
| Imports | circlize (>= 0.4.1), GetoptLong, colorspace, RColorBrewer, GlobalOptions (>= 0.0.10) |
| System Requirements | |
| URL | https://github.com/jokergoo/ComplexHeatmap |
See More
| Suggests | testthat (>= 0.3), knitr, markdown, cluster, MASS, pvclust, dendsort, HilbertCurve, Cairo, png, jpeg, tiff, fastcluster, dendextend (>= 1.0.1) |
| Linking To | |
| Enhances | |
| Depends On Me | EnrichedHeatmap, recoup |
| Imports Me | DEGreport, DEP, ELMER, EnrichmentBrowser, fCCAC, ImpulseDE2, maftools, MWASTools, TCGAbiolinks, YAPSA |
| Suggests Me | gtrellis, HilbertCurve |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ComplexHeatmap_1.17.1.tar.gz |
| Windows Binary | ComplexHeatmap_1.17.1.zip |
| Mac OS X 10.11 (El Capitan) | ComplexHeatmap_1.17.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ComplexHeatmap |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ComplexHeatmap |
| Package Short Url | https://bioconductor.org/packages/ComplexHeatmap/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |