EGAD
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see EGAD.
Extending guilt by association by degree
Bioconductor version: 3.6
The package implements a series of highly efficient tools to calculate functional properties of networks based on guilt by association methods.
Author: Sara Ballouz [aut, cre], Melanie Weber [aut, ctb], Paul Pavlidis [aut], Jesse Gillis [aut, ctb]
Maintainer: Sara Ballouz <sballouz at cshl.edu>
citation("EGAD")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("EGAD")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("EGAD")| "EGAD user guide" | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | FunctionalGenomics, FunctionalPrediction, GenePrediction, GraphAndNetwork, Network, NetworkEnrichment, Software, SystemsBiology |
| Version | 1.6.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8 years) |
| License | GPL-2 |
| Depends | R (>= 3.3) |
| Imports | gplots, Biobase, GEOquery, limma, arrayQualityMetrics, impute, RColorBrewer, zoo, igraph, plyr, Matrix, MASS, RCurl, affy |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | EGAD_1.6.0.tar.gz |
| Windows Binary | EGAD_1.6.0.zip |
| Mac OS X 10.11 (El Capitan) | EGAD_1.6.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/EGAD |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/EGAD |
| Package Short Url | https://bioconductor.org/packages/EGAD/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |