RCyjs
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see RCyjs.
Display and manipulate graphs in cytoscape.js
Bioconductor version: 3.6
Interactive viewing and exploration of graphs, connecting R to Cytoscape.js.
Author: Paul Shannon
Maintainer: Paul Shannon <pshannon at systemsbiology.org>
Citation (from within R, enter
citation("RCyjs")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("RCyjs")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("RCyjs")| RCyjs | R Script | |
| Reference Manual | ||
| README | Text | |
| NEWS | Text |
Details
| biocViews | GraphAndNetwork, Software, ThirdPartyClient, Visualization |
| Version | 1.10.0 |
| In Bioconductor since | BioC 3.1 (R-3.2) (9 years) |
| License | GPL-2 |
| Depends | R (>= 3.2.0), BrowserViz(>= 1.1.7), graph(>= 1.44.0) |
| Imports | methods, httpuv (>= 1.3.2), Rcpp (>= 0.11.5), jsonlite (>= 0.9.15), BiocGenerics, igraph, base64enc |
| System Requirements | |
| URL | http://rcytoscape.systemsbiology.net |
See More
| Suggests | RUnit, BiocStyle, RefNet |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | RCyjs_1.10.0.tar.gz |
| Windows Binary | |
| Mac OS X 10.11 (El Capitan) | RCyjs_1.10.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/RCyjs |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/RCyjs |
| Package Short Url | https://bioconductor.org/packages/RCyjs/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |