bsseq

This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see bsseq.

Analyze, manage and store bisulfite sequencing data

Bioconductor version: 3.6

A collection of tools for analyzing and visualizing bisulfite sequencing data.

Author: Kasper Daniel Hansen [aut, cre], Peter Hickey [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Citation (from within R, enter citation("bsseq")):

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("bsseq")

For older versions of R, please refer to the appropriate Bioconductor release.

biocViews	DNAMethylation, Software
Version	1.14.0
In Bioconductor since	BioC 2.11 (R-2.15) (11.5 years)
License	Artistic-2.0
Depends	R (>= 3.3), methods, BiocGenerics, GenomicRanges(>= 1.29.14), SummarizedExperiment(>= 1.7.8), parallel
Imports	IRanges(>= 2.11.16), GenomeInfoDb, scales, stats, graphics, Biobase, locfit, gtools, data.table, S4Vectors, R.utils (>= 2.0.0), matrixStats (>= 0.50.0), permute, limma, DelayedArray, HDF5Array
System Requirements
URL	https://github.com/kasperdanielhansen/bsseq
Bug Reports	https://github.com/kasperdanielhansen/bsseq/issues

Suggests	RUnit, bsseqData, BiocStyle, rmarkdown, knitr
Linking To
Enhances
Depends On Me	bsseqData, DSS
Imports Me	MIRA
Suggests Me
Links To Me
Build Report	Build Report

Follow Installation instructions to use this package in your R session.

Source Package	bsseq_1.14.0.tar.gz
Windows Binary	bsseq_1.14.0.zip
Mac OS X 10.11 (El Capitan)	bsseq_1.14.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/bsseq
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/bsseq
Package Short Url	https://bioconductor.org/packages/bsseq/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive