clusterExperiment
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see clusterExperiment.
Compare Clusterings for Single-Cell Sequencing
Bioconductor version: 3.6
Provides functionality for running and comparing many different clusterings of single-cell sequencing data or other large mRNA Expression data sets.
Author: Elizabeth Purdom [aut, cre, cph], Davide Risso [aut], Marla Johnson [ctb]
Maintainer: Elizabeth Purdom <epurdom at stat.berkeley.edu>
Citation (from within R, enter
citation("clusterExperiment")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("clusterExperiment")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | Clustering, RNASeq, Sequencing, SingleCell, Software |
| Version | 1.4.0 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 3.4), SummarizedExperiment |
| Imports | methods, NMF, RColorBrewer, ape, phylobase, cluster, stats, limma, dendextend, howmany, locfdr, matrixStats, graphics, parallel, RSpectra, kernlab, stringr |
| System Requirements | |
| URL | |
| Bug Reports | https://github.com/epurdom/clusterExperiment/issues |
See More
| Suggests | BiocStyle, knitr, testthat, scRNAseq, MAST |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | clusterExperiment_1.4.0.tar.gz |
| Windows Binary | clusterExperiment_1.4.0.zip |
| Mac OS X 10.11 (El Capitan) | clusterExperiment_1.4.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/clusterExperiment |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/clusterExperiment |
| Package Short Url | https://bioconductor.org/packages/clusterExperiment/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |