dagLogo
This package is for version 3.6 of Bioconductor; for the stable, up-to-date release version, see dagLogo.
dagLogo
Bioconductor version: 3.6
Visualize significant conserved amino acid sequence pattern in groups based on probability theory.
Author: Jianhong Ou, Alexey Stukalov, Niraj Nirala, Usha Acharya, Lihua Julie Zhu
Maintainer: Jianhong Ou <jianhong.ou at umassmed.edu>
Citation (from within R, enter
citation("dagLogo")):
Installation
To install this package, start R (version "3.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("dagLogo")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual | |
| NEWS | Text |
Details
| biocViews | SequenceMatching, Software, Visualization |
| Version | 1.16.1 |
| In Bioconductor since | BioC 2.13 (R-3.0) (10.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 3.0.1), methods, biomaRt, grImport, grid, motifStack |
| Imports | pheatmap, Biostrings |
| System Requirements | |
| URL |
See More
| Suggests | XML, UniProt.ws, BiocStyle, knitr, rmarkdown, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | dagLogo_1.16.1.tar.gz |
| Windows Binary | dagLogo_1.16.1.zip |
| Mac OS X 10.11 (El Capitan) | dagLogo_1.16.1.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/dagLogo |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/dagLogo |
| Package Short Url | https://bioconductor.org/packages/dagLogo/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.6 | Source Archive |