netReg

This package is for version 3.6 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see netReg.

Network-Regularized Regression Models

Bioconductor version: 3.6

netReg fits linear regression models using network-penalization. Graph prior knowledge, in the form of biological networks, is being incorporated into the likelihood of the linear model. The networks describe biological relationships such as co-regulation or dependency of the same transcription factors/metabolites/etc. yielding a part sparse and part smooth solution for coefficient profiles.

Author: Simon Dirmeier [aut, cre]

Maintainer: Simon Dirmeier <simon.dirmeier at web.de>

Citation (from within R, enter citation("netReg")):

Installation

To install this package, start R (version "3.4") and enter:


if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("netReg")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation


Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	FeatureExtraction, GraphAndNetwork, Network, Regression, Software, StatisticalMethod
Version	1.2.0
In Bioconductor since	BioC 3.5 (R-3.4) (7 years)
License	GPL-3
Depends	R (>= 3.4)
Imports	Rcpp, stats
System Requirements	C++11
URL	https://github.com/dirmeier/netReg
Bug Reports	https://github.com/dirmeier/netReg/issues

Suggests	testthat, knitr, rmarkdown, BiocStyle, lintr, lassoshooting
Linking To	Rcpp, RcppArmadillo
Enhances
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report	Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	netReg_1.2.0.tar.gz
Windows Binary	netReg_1.2.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	netReg_1.2.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/netReg
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/netReg
Package Short Url	https://bioconductor.org/packages/netReg/
Package Downloads Report	Download Stats
Old Source Packages for BioC 3.6	Source Archive