Guitar
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see Guitar.
Guitar
Bioconductor version: 3.7
The package is designed for visualization of RNA-related genomic features with respect to the landmarks of RNA transcripts, i.e., transcription starting site, start codon, stop codon and transcription ending site.
Author: Jia Meng
Maintainer: Jia Meng <jia.meng at xjtlu.edu.cn>
citation("Guitar")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("Guitar")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Guitar")| Sample Guitar workflow | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Alignment, Coverage, DataImport, MethylSeq, QualityControl, RNASeq, Sequencing, Software, SplicedAlignment, Transcription |
| Version | 1.18.0 |
| In Bioconductor since | BioC 3.2 (R-3.2) (8.5 years) |
| License | GPL-2 |
| Depends | Rsamtools, GenomicFeatures, rtracklayer, GenomicAlignments, GenomicRanges, ggplot2, grid, IRanges |
| Imports | |
| System Requirements | |
| URL |
See More
| Suggests | |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | Guitar_1.18.0.tar.gz |
| Windows Binary | Guitar_1.18.0.zip |
| Mac OS X 10.11 (El Capitan) | Guitar_1.18.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/Guitar |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Guitar |
| Package Short Url | https://bioconductor.org/packages/Guitar/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |