iChip
This package is for version 3.7 of Bioconductor; for the stable, up-to-date release version, see iChip.
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models
Bioconductor version: 3.7
This package uses hidden Ising models to identify enriched genomic regions in ChIP-chip data. It can be used to analyze the data from multiple platforms (e.g., Affymetrix, Agilent, and NimbleGen), and the data with single to multiple replicates.
Author: Qianxing Mo
Maintainer: Qianxing Mo <qmo at bcm.edu>
citation("iChip")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("iChip")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("iChip")| iChip | R Script | |
| Reference Manual |
Details
| biocViews | AgilentChip, ChIPchip, Microarray, OneChannel, Software |
| Version | 1.34.0 |
| In Bioconductor since | BioC 2.6 (R-2.11) (14 years) |
| License | GPL (>= 2) |
| Depends | R (>= 2.10.0) |
| Imports | limma |
| System Requirements | |
| URL |
See More
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| Depends On Me | |
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| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | iChip_1.34.0.tar.gz |
| Windows Binary | iChip_1.34.0.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | iChip_1.34.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/iChip |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/iChip |
| Package Short Url | https://bioconductor.org/packages/iChip/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |