phenoDist
This package is for version 3.7 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see phenoDist.
Phenotypic distance measures
Bioconductor version: 3.7
PhenoDist is designed for measuring phenotypic distance in image-based high-throughput screening, in order to identify strong phenotypes and to group treatments into functional clusters.
Author: Xian Zhang, Gregoire Pau, Wolfgang Huber, Michael Boutros
Maintainer: Xian Zhang <xianzhang at gmail.com>
citation("phenoDist")):
Installation
To install this package, start R (version "3.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("phenoDist")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("phenoDist")| Introduction to phenoDist | R Script | |
| Reference Manual |
Details
| biocViews | CellBasedAssays, Software |
| Version | 1.27.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (13 years) |
| License | LGPL-2.1 |
| Depends | R (>= 2.9.0), imageHTS, e1071 |
| Imports | |
| System Requirements | |
| URL | http://www.dkfz.de/signaling http://www.embl.de/research/units/genome_biology/huber/ |
See More
| Suggests | GOstats, MASS |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | phenoDist_1.27.0.tar.gz |
| Windows Binary | phenoDist_1.27.0.zip |
| Mac OS X 10.11 (El Capitan) | phenoDist_1.27.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/phenoDist |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/phenoDist |
| Package Short Url | https://bioconductor.org/packages/phenoDist/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.7 | Source Archive |