synergyfinder
This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see synergyfinder.
Calculate and Visualize Synergy Scores for Drug Combinations
Bioconductor version: 3.9
Efficient implementations for all the popular synergy scoring models for drug combinations, including HSA, Loewe, Bliss and ZIP and visualization of the synergy scores as either a two-dimensional or a three-dimensional interaction surface over the dose matrix.
Author: Liye He <liye.he at helsinki.fi>, Jing Tang <jing.tang at helsinki.fi>, Shuyu Zheng <shuyu.zheng at helsinki.fi>
Maintainer: Shuyu Zheng <shuyu.zheng at helsinki.fi>
citation("synergyfinder")):
Installation
To install this package, start R (version "3.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("synergyfinder")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("synergyfinder")| synergyfinder | R Script | |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | Software, StatisticalMethod |
| Version | 1.10.7 |
| In Bioconductor since | BioC 3.4 (R-3.3) (7.5 years) |
| License | Mozilla Public License 2.0 |
| Depends | R (>= 3.6.0) |
| Imports | drc (>= 2.5-12), reshape2 (>= 1.4.1), SpatialExtremes (>= 2.0-2), ggplot2 (>= 2.1.0), grid (>= 3.2.4), lattice (>= 0.20-33), nleqslv (>= 3.0), stats (>= 3.3.0), graphics (>= 3.3.0), grDevices (>= 3.3.0) |
| System Requirements | |
| URL |
See More
| Suggests | knitr, rmarkdown |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | synergyfinder_1.10.7.tar.gz |
| Windows Binary | synergyfinder_1.10.7.zip (32- & 64-bit) |
| Mac OS X 10.11 (El Capitan) | synergyfinder_1.10.7.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/synergyfinder |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/synergyfinder |
| Bioc Package Browser | https://code.bioconductor.org/browse/synergyfinder/ |
| Package Short Url | https://bioconductor.org/packages/synergyfinder/ |
| Package Downloads Report | Download Stats |
| Old Source Packages for BioC 3.9 | Source Archive |