breakpointR
This is the development version of breakpointR; for the stable release version, see breakpointR.
Find breakpoints in Strand-seq data
Bioconductor version: Development (3.23)
This package implements functions for finding breakpoints, plotting and export of Strand-seq data.
Author: David Porubsky, Ashley Sanders, Aaron Taudt
Maintainer: David Porubsky <david.porubsky at gmail.com>
Citation (from within R, enter
citation("breakpointR")):
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("breakpointR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
| Reference Manual |
Details
| biocViews | Coverage, DNASeq, Sequencing, SingleCell, Software |
| Version | 1.29.0 |
| In Bioconductor since | BioC 3.8 (R-3.5) (7 years) |
| License | file LICENSE |
| Depends | R (>= 3.5), GenomicRanges, cowplot, breakpointRdata |
| Imports | methods, utils, grDevices, stats, S4Vectors, GenomeInfoDb(>= 1.12.3), IRanges, Rsamtools, GenomicAlignments, ggplot2, BiocGenerics, gtools, doParallel, foreach |
| System Requirements | |
| URL | https://github.com/daewoooo/BreakPointR |
See More
| Suggests | knitr, BiocStyle, testthat |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | |
| Windows Binary (x86_64) | |
| macOS Binary (x86_64) | |
| macOS Binary (arm64) | |
| Source Repository | git clone https://git.bioconductor.org/packages/breakpointR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/breakpointR |
| Package Short Url | https://bioconductor.org/packages/breakpointR/ |
| Package Downloads Report | Download Stats |