# Generated by roxygen2: do not edit by hand

export(GeDi)
export(buildClusterGraph)
export(buildGraph)
export(buildHistogramData)
export(calculateJaccard)
export(calculateKappa)
export(calculateSorensenDice)
export(checkInclusion)
export(clustering)
export(distanceDendro)
export(distanceHeatmap)
export(enrichmentWordcloud)
export(fuzzyClustering)
export(getAdjacencyMatrix)
export(getAnnotation)
export(getBipartiteGraph)
export(getClusterAdjacencyMatrix)
export(getGenes)
export(getGraphTitle)
export(getId)
export(getInteractionScore)
export(getJaccardMatrix)
export(getKappaMatrix)
export(getMeetMinMatrix)
export(getPPI)
export(getSorensenDiceMatrix)
export(getStringDB)
export(getpMMMatrix)
export(goDistance)
export(gsHistogram)
export(kMeansClustering)
export(kNN_clustering)
export(louvainClustering)
export(markovClustering)
export(pMMlocal)
export(pamClustering)
export(prepareGenesetData)
export(scaleGO)
export(seedFinding)
import(Matrix)
import(STRINGdb)
import(fontawesome)
import(ggplot2)
import(igraph)
import(shiny)
import(shinyBS)
import(visNetwork)
importFrom(BiocFileCache,BiocFileCache)
importFrom(BiocFileCache,bfcadd)
importFrom(BiocFileCache,bfccount)
importFrom(BiocFileCache,bfcdownload)
importFrom(BiocFileCache,bfcneedsupdate)
importFrom(BiocFileCache,bfcquery)
importFrom(BiocNeighbors,findKNN)
importFrom(BiocParallel,SerialParam)
importFrom(BiocParallel,bplapply)
importFrom(ComplexHeatmap,Heatmap)
importFrom(GOSemSim,goSim)
importFrom(GOSemSim,godata)
importFrom(GeneTonic,cluster_markov)
importFrom(GeneTonic,map2color)
importFrom(Matrix,Matrix)
importFrom(RColorBrewer,brewer.pal)
importFrom(bs4Dash,box)
importFrom(bs4Dash,bs4Card)
importFrom(bs4Dash,bs4DashBody)
importFrom(bs4Dash,bs4DashBrand)
importFrom(bs4Dash,bs4DashControlbar)
importFrom(bs4Dash,bs4DashFooter)
importFrom(bs4Dash,bs4DashNavbar)
importFrom(bs4Dash,bs4DashPage)
importFrom(bs4Dash,bs4DashSidebar)
importFrom(bs4Dash,bs4SidebarMenu)
importFrom(bs4Dash,bs4SidebarMenuItem)
importFrom(bs4Dash,bs4TabItem)
importFrom(bs4Dash,bs4TabItems)
importFrom(bs4Dash,renderbs4InfoBox)
importFrom(bs4Dash,updateBox)
importFrom(circlize,colorRamp2)
importFrom(cluster,pam)
importFrom(dplyr,distinct)
importFrom(ggdendro,ggdendrogram)
importFrom(grDevices,colorRampPalette)
importFrom(igraph,E)
importFrom(igraph,V)
importFrom(igraph,cluster_louvain)
importFrom(igraph,degree)
importFrom(igraph,delete_vertices)
importFrom(igraph,get.edgelist)
importFrom(igraph,graph_from_adjacency_matrix)
importFrom(igraph,make_bipartite_graph)
importFrom(igraph,membership)
importFrom(igraph,set_vertex_attr)
importFrom(parallel,mclapply)
importFrom(plotly,plotlyOutput)
importFrom(plotly,renderPlotly)
importFrom(rintrojs,introjs)
importFrom(shinycssloaders,withSpinner)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,kmeans)
importFrom(stats,na.omit)
importFrom(tm,TermDocumentMatrix)
importFrom(tm,VCorpus)
importFrom(tm,VectorSource)
importFrom(tm,removePunctuation)
importFrom(tm,removeWords)
importFrom(tm,stopwords)
importFrom(tm,stripWhitespace)
importFrom(tm,tm_map)
importFrom(tools,R_user_dir)
importFrom(utils,data)
importFrom(utils,read.delim)
importFrom(wordcloud2,wordcloud2)
