Package: MatrixRider
Type: Package
Title: Obtain total affinity and occupancies for binding site matrices
        on a given sequence
Version: 1.42.0
Date: 2015-11-02
Author: Elena Grassi
Maintainer: Elena Grassi <grassi.e@gmail.com>
Description: Calculates a single number for a whole sequence that
        reflects the propensity of a DNA binding protein to interact
        with it. The DNA binding protein has to be described with a PFM
        matrix, for example gotten from Jaspar.
biocViews: GeneRegulation, Genetics, MotifAnnotation
License: GPL-3
Depends: R (>= 3.1.2)
Imports: methods, TFBSTools, IRanges, XVector, Biostrings
Suggests: RUnit, BiocGenerics, BiocStyle, JASPAR2014
LinkingTo: IRanges, XVector, Biostrings, S4Vectors
NeedsCompilation: yes
Config/pak/sysreqs: make libgsl0-dev libbz2-dev liblzma-dev libxml2-dev
        libssl-dev
Repository: https://bioc-release.r-universe.dev
Date/Publication: 2025-10-29 14:24:34 UTC
RemoteUrl: https://github.com/bioc/MatrixRider
RemoteRef: RELEASE_3_22
RemoteSha: a79a3cccc6b716f935046bac4e2e4a518a0f7382
Packaged: 2025-11-11 20:42:45 UTC; root
Built: R 4.5.2; x86_64-w64-mingw32; 2025-11-11 20:47:26 UTC; windows
Archs: x64
