ABF1_sacCer3	ABF1_sacCer3
alignToTSS	alignToTSS
ATAC_ce11_Serizay2020	ATAC_ce11_Serizay2020
bam_test	bam_test
ce11_all_REs	ce11_all_REs
ce11_proms	ce11_proms
computeNucleosomeEnrichmentOverBackground	computeNucleosomeEnrichmentOverBackground
computeVmat	computeVmat
CTCF_hg38	CTCF_hg38
deconvolveBidirectionalPromoters	deconvolveBidirectionalPromoters
getCuts	getCuts
getFragmentsDistribution	getFragmentsDistribution
importPEBamFiles	importPEBamFiles
MNase_sacCer3_Henikoff2011	MNase_sacCer3_Henikoff2011
MNase_sacCer3_Henikoff2011_subset	MNase_sacCer3_Henikoff2011_subset
normalizeVmat	normalizeVmat
nucleosomeEnrichment	nucleosomeEnrichment
nucleosomeEnrichment.GRanges	nucleosomeEnrichment.GRanges
nucleosomeEnrichment.Vmat	nucleosomeEnrichment.Vmat
plotFootprint	plotFootprint
plotProfile	plotProfile
plotVmat	plotVmat
plotVmat.default	plotVmat.default
plotVmat.GRanges	plotVmat.GRanges
plotVmat.list	plotVmat.list
plotVmat.Vmat	plotVmat.Vmat
plotVmat.VmatList	plotVmat.VmatList
REB1_sacCer3	REB1_sacCer3
sampleGRanges	sampleGRanges
sampleGRanges.GRanges	sampleGRanges.GRanges
shiftATACGranges	shiftATACGranges
shuffleVmat	shuffleVmat
theme_ggplot2	theme_ggplot2
