# Generated by roxygen2: do not edit by hand

export(IRSnorm)
export(assignColours)
export(coefVar)
export(computeDiffStats)
export(convertToMSnset)
export(corrPlot)
export(coveragePlot)
export(getContrastResults)
export(groupScaling)
export(hierarchicalPlot)
export(intensityBoxplot)
export(intensityPlot)
export(maVolPlot)
export(mergePeptides)
export(mergeSites)
export(normalizeQuantiles)
export(normalizeScaling)
export(pcaPlot)
export(peptideIntensityPlot)
export(plotMeanVar)
export(regressIntensity)
export(rliPlot)
export(rowScaling)
export(summarizeIntensities)
import(MSnbase)
import(RColorBrewer)
import(assertthat)
import(ggplot2)
import(limma)
import(preprocessCore)
importFrom(Biobase,"exprs<-")
importFrom(Biobase,"featureNames<-")
importFrom(Biobase,"pData<-")
importFrom(Biobase,exprs)
importFrom(Biobase,fData)
importFrom(Biobase,featureNames)
importFrom(Biobase,pData)
importFrom(Biobase,sampleNames)
importFrom(BiocGenerics,lapply)
importFrom(Biostrings,readAAStringSet)
importFrom(Biostrings,vmatchPattern)
importFrom(IRanges,IRanges)
importFrom(IRanges,end)
importFrom(IRanges,reduce)
importFrom(IRanges,start)
importFrom(IRanges,width)
importFrom(dplyr,across)
importFrom(dplyr,arrange)
importFrom(dplyr,bind_cols)
importFrom(dplyr,bind_rows)
importFrom(dplyr,case_when)
importFrom(dplyr,desc)
importFrom(dplyr,distinct)
importFrom(dplyr,everything)
importFrom(dplyr,filter)
importFrom(dplyr,group_by)
importFrom(dplyr,left_join)
importFrom(dplyr,mutate)
importFrom(dplyr,n)
importFrom(dplyr,n_distinct)
importFrom(dplyr,pull)
importFrom(dplyr,rename)
importFrom(dplyr,rename_with)
importFrom(dplyr,select)
importFrom(dplyr,summarize)
importFrom(dplyr,ungroup)
importFrom(ggdendro,dendro_data)
importFrom(ggdendro,label)
importFrom(grDevices,colorRampPalette)
importFrom(graphics,hist)
importFrom(graphics,par)
importFrom(magrittr,"%$%")
importFrom(magrittr,"%<>%")
importFrom(magrittr,"%>%")
importFrom(purrr,map_dfr)
importFrom(purrr,map_lgl)
importFrom(readr,write_tsv)
importFrom(rlang,sym)
importFrom(scales,squish)
importFrom(stats,as.dendrogram)
importFrom(stats,as.formula)
importFrom(stats,cor)
importFrom(stats,dist)
importFrom(stats,hclust)
importFrom(stats,lm)
importFrom(stats,median)
importFrom(stats,model.matrix)
importFrom(stats,na.omit)
importFrom(stats,prcomp)
importFrom(stats,resid)
importFrom(stats,setNames)
importFrom(stats,smooth.spline)
importFrom(stats,var)
importFrom(stringr,str_c)
importFrom(stringr,str_detect)
importFrom(stringr,str_replace)
importFrom(stringr,str_replace_all)
importFrom(tibble,column_to_rownames)
importFrom(tibble,rownames_to_column)
importFrom(tibble,tibble)
importFrom(tidyr,drop_na)
importFrom(tidyr,pivot_longer)
importFrom(tidyr,pivot_wider)
importFrom(tidyr,replace_na)
importFrom(tidyselect,all_of)
importFrom(tidyselect,one_of)
importFrom(utils,head)
