ABarray
Microarray QA and statistical data analysis for Applied Biosystems Genome Survey Microrarray (AB1700) gene expression data.
Bioconductor version: Release (3.20)
Automated pipline to perform gene expression analysis for Applied Biosystems Genome Survey Microarray (AB1700) data format. Functions include data preprocessing, filtering, control probe analysis, statistical analysis in one single function. A GUI interface is also provided. The raw data, processed data, graphics output and statistical results are organized into folders according to the analysis settings used.
Author: Yongming Andrew Sun
Maintainer: Yongming Andrew Sun <sunya at appliedbiosystems.com>
citation("ABarray")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("ABarray")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("ABarray")| ABarray gene expression | |
| ABarray gene expression GUI interface | |
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, Software |
| Version | 1.74.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (18 years) |
| License | GPL |
| Depends | |
| Imports | Biobase, graphics, grDevices, methods, multtest, stats, tcltk, utils |
| System Requirements | |
| URL |
See More
| Suggests | limma, LPE |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | ABarray_1.74.0.tar.gz |
| Windows Binary (x86_64) | ABarray_1.74.0.zip |
| macOS Binary (x86_64) | ABarray_1.74.0.tgz |
| macOS Binary (arm64) | ABarray_1.73.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/ABarray |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/ABarray |
| Bioc Package Browser | https://code.bioconductor.org/browse/ABarray/ |
| Package Short Url | https://bioconductor.org/packages/ABarray/ |
| Package Downloads Report | Download Stats |