DNAshapeR
High-throughput prediction of DNA shape features
Bioconductor version: Release (3.20)
DNAhapeR is an R/BioConductor package for ultra-fast, high-throughput predictions of DNA shape features. The package allows to predict, visualize and encode DNA shape features for statistical learning.
Author: Tsu-Pei Chiu and Federico Comoglio
Maintainer: Tsu-Pei Chiu <tsupeich at usc.edu>
Citation (from within R, enter
citation("DNAshapeR")):
Installation
To install this package, start R (version "4.4") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
BiocManager::install("DNAshapeR")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("DNAshapeR")| DNAshapeR | HTML | R Script |
| Reference Manual | ||
| NEWS | Text |
Details
| biocViews | DNA3DStructure, Software, StructuralPrediction |
| Version | 1.34.0 |
| In Bioconductor since | BioC 3.3 (R-3.3) (8.5 years) |
| License | GPL-2 |
| Depends | R (>= 3.4), GenomicRanges |
| Imports | Rcpp (>= 0.12.1), Biostrings, fields |
| System Requirements | |
| URL |
See More
| Suggests | AnnotationHub, knitr, rmarkdown, testthat, BSgenome.Scerevisiae.UCSC.sacCer3, BSgenome.Hsapiens.UCSC.hg19, caret |
| Linking To | Rcpp |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | DNAshapeR_1.34.0.tar.gz |
| Windows Binary (x86_64) | DNAshapeR_1.34.0.zip (64-bit only) |
| macOS Binary (x86_64) | DNAshapeR_1.34.0.tgz |
| macOS Binary (arm64) | DNAshapeR_1.33.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/DNAshapeR |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/DNAshapeR |
| Bioc Package Browser | https://code.bioconductor.org/browse/DNAshapeR/ |
| Package Short Url | https://bioconductor.org/packages/DNAshapeR/ |
| Package Downloads Report | Download Stats |